Test Core Page

Please contact Indu Raman, Indu.Raman@UTSouthwestern.edu. [short code to display name, email for the lab manager for the core.]

Microarray Core Lab Manager
Expertise: Luminex, Nanostring GeoMx-DSP
Indu.Raman@UTSouthwestern.edu
214-645-6071

Guangchun Chen

Microarray Core Research Scientist
Expertise: micRNA , qPCR, DSP
Guangchun.Chen@UTSouthwestern.edu
214-645-6072

Microarray Core Research Associate
Expertise: Protein array, SNP genotyping
Tao.Chen@UTSouthwestern.edu
214-645-6071

Microarray Core Research Scientist
Expertise: Protein array, MSD
Mei.Yan@UTSouthwestern.edu
214-645-6071

Chengsong Zhu

Microarray Core Biostatistical Consultant-II
Expertise: Data analysis, bioinformatics
Chengsong.Zhu@UTSouthwestern.edu
214-645-6071

Pratibha Selvakumar

Microarray Core Research Associate
Expertise: SIMOA, Luminex
Pratibha.Selvakumar@UTSouthwestern.edu
214-645-6071

[need short code to display by core]

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16S V3-V4 Amplicon Sequencing

3’ Single cell RNA sequencing-10XGenomics MRL

5’ Single cell RNA sequencing-10XGenomics MRL

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome

A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency

Activation of cyclic GMP-AMP synthase by self-DNA causes autoimmune diseases

Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA

Affymetrix

Amino acid signatures of HLA Class-I and II molecules are strongly associated with SLE susceptibility and autoantibody production in Eastern Asians

Applied Biosystems 7500 | Thermo Fisher Scientific

Association between Antibiotic Exposure and Systemic Immune Parameters in Cancer Patients Receiving Checkpoint Inhibitor Therapy

Association between body mass index, dosing strategy, and efficacy of immune checkpoint inhibitors

Autoantibodies to Perilipin-1 Define a Subset of Acquired Generalized Lipodystrophy

Autoantigen Microarray

Bacterial RNA Sequencing

Bioanalyzer

Bioanalyzer 2100 | Agilent Technologies

Blue Pippin DNA Size Selection System | Sage Science

Bo Zhang

Carlos Arana

Carlos Arana

Chaoying Liang

Chengsong Zhu

Chromium iX | 10x Genomics

Circadian clock cryptochrome proteins regulate autoimmunity

Comprehensive microRNA-seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats

CosMx Spacial Molecular Imager (SMI) | NanoString

Countess 3 Automated Cell Counter | Thermo Fisher Scientific

Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

CXCR5 + PD-1 + follicular helper CD8 T cells control B cell tolerance

Cytassist | 10x Genomics

Cytosolic Nuclease TREX1 Regulates Oligosaccharyltransferase Activity Independent of Nuclease Activity to Suppress Immune Activation

Deep sequencing reveals a DAP1 regulatory haplotype that potentiates autoimmunity in systemic lupus erythematosus

Deep sequencing reveals a DAP1 regulatory haplotype that potentiates autoimmunity in systemic lupus erythematosus

Digital Spatial Profiling

DNA polymerase-α regulates the activation of type I interferons through cytosolic RNA:DNA synthesis

DNA/RNA Extraction

DNA/RNA Extraction MRL

Endocannabinoids Inhibit the Induction of Virulence in Enteric Pathogens

Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology

Fixed RNA Single cell RNA sequencing-10XGenomics MRL

Full-length 16S rRNA Gene Sequencing

GenePix 4400A Microarray Scanner | Molecular Devices

Genomics Core

GeoMx DSP Spatial Genomics | NanoString

Guangchun Chen

Hem-1 regulates protective humoral immunity and limits autoantibody production in a B cell-specific manner

HiSeq4K Sequencer 1 | Illumina

Hyperactivated PI3Kδ promotes self and commensal reactivity at the expense of optimal humoral immunity

IL10 restrains autoreactive B cells in transgenic mice expressing inactive RAG1

Illumina iScan System

Impact of Bead-Beating Intensity on the Genus- and Species-Level Characterization of the Gut Microbiome Using Amplicon and Complete 16S rRNA Gene Sequencing

In-Depth Evaluation of a Case of Presumed Myocarditis After the Second Dose of COVID-19 mRNA Vaccine

Indu Raman

Integration of Genome-Wide DNA Methylation and Transcription Uncovered Aberrant Methylation-Regulated Genes and Pathways in the Peripheral Blood Mononuclear Cells of Systemic Sclerosis

IRF1 governs the differential interferon-stimulated gene responses in human monocytes and macrophages by regulating chromatin accessibility

IRGM1 links mitochondrial quality control to autoimmunity

iScan System | Illumina

ITS (Internal transcribed spacer) Sequencing for Fungi Detection

Jinchun Zhou

Loss-of-function variants in SAT1 cause X-linked childhood-onset systemic lupus erythematosus

Lower baseline autoantibody levels are associated with immune-related adverse events from immune checkpoint inhibition

Luminex

LUNA-FL Dual Fluorescence Cell Counter | Logos Biosystems

Mei Yan

Meso Scale Discovery

Meso Scale Discovery (MSD) Assay Service | NorthEast BioLab

Metatranscriptomics Illumina MRL

Microarray Core

Microbiome Core

MinION Mk1C | Nanopore

MiSeqDx | Illumina

Molecular Signature Predictive of Long-Term Liver Fibrosis Progression to Inform Antifibrotic Drug Development

Molecular signatures of long-term hepatocellular carcinoma risk in nonalcoholic fatty liver disease

mRNAseq-Strand Specific Library Preparation